Waller, Thomas R. 1991. Evolutionary relationships among commercial scallops. In: Shumway, Sandra E., Scallops: Biology, Ecology and Aquaculture. Amsterdam: Elsevier,() pp.1-73.
Waller, Thomas R. and Macintyre, Ian G. 1982. Larval settlement behavior and shell morphology of Malleus candeanus (d'Orbigny) (Mollusca: Bivalvia). In: Rützler, Klaus and Macintyre, Ian G., The Atlantic Barrier Reef ecosystem at Carrie Bow Cay, Belize, I: Structure and communities. : ,(Smithsonian Contributions to Marine Sciences) pp.203-219.
Berkman, Paul Arthur, Waller, Thomas R. and Alexander, S. P. 1991. Unprotected larval development in the Antarctic scallop Adamussium colbeck (Mollusca: Bivalvia: Pectinidae). Antarctic Science, 3(2): 151-157.
Waller, Thomas R. 1998. Origin of the molluscan class Bivalvia and a phylogeny of major groups. In: Johnston, Paul A. and Haggart, James W., Bivalves: An Eon of Evolution: Paleobiological Studies Honoring Norman D. Newell. Calgary: University of Calgary Press,() pp.1-45.
Systematics and biostratigraphy of Chesapecten and Carolinapecten (Mollusca: Bivalvia: Pectinidae) in the upper Miocene and Pliocene "lower Tamiami Formation" of southwestern Florida
Waller, Thomas R. 2018. Systematics and biostratigraphy of Chesapecten and Carolinapecten (Mollusca: Bivalvia: Pectinidae) in the upper Miocene and Pliocene "lower Tamiami Formation" of southwestern Florida. Bulletin of the Florida Museum of Natural History, 56(1): 1-47.
Waller, Thomas R. 1972. The functional significance of some shell microstructures in the Pectinacea (Mollusca: Bivalvia). General Proceedings, : 31-52.
Fossil Invertebrates - Collections in North American repositories, 1976: a report of the Paleontological Society Ad Hoc Committee on North American Resources in Invertebrate Paleontology (CONARIP)
Glenister, Brian F., Bolton, Thomas E., Broadhead, T. W., Eldredge, Niles, Silberling, Norman J., Sweet, Walter C. and Waller, Thomas R. 1977. Fossil Invertebrates - Collections in North American repositories, 1976: a report of the Paleontological Society Ad Hoc Committee on North American Resources in Invertebrate Paleontology (CONARIP). Iowa City, Iowa: University of Iowa Press, pp., 67 pp.
Waller, Thomas R. 1976. The behavior and tentacle morphology of pteriomorphian bivalves: a motion-picture study. Bulletin of the American Malacological Union, 1975: 7-13.
Waller, Thomas R. 2011. Neogene Paleontology of the Northern Dominican Republic. 24. Propeamussiidae and Pectinidae. Ithaca, NY: Ithaca, NY : Paleontological Research Institution, pp., 198 pp.
Waller, Thomas R. 1975. The Origin of Foliated-Calcite Shell Microstructure in the Subclass Pteriomorphia (Mollusca: Bivalvia). Bulletin of the American Malacological Union, Inc.for 1975, 1975: 57-58.
Waller, Thomas R. 1990. The evolution of ligament systems in the Bivalvia. In: Morton, Brian, The Bivalvia : Proceedings of a Memorial Symposium in Honour of Sir Charles Maurice Yonge 1899-1986 at the IXth International Malacological Congress, 1986, Edinburgh. Hong Kong: Hong Kong University Press,() pp.49-71.