Gallegos, Charles L., Kenworthy, W. Judson, Biber, Patrick D., and Wolfe, Bret S. 2009. "Underwater Spectral Energy Distribution and Seagrass Depth Limits along an Optical Water Quality Gradient." In Proceedings of the Smithsonian Marine Science Symposium. Lang, Michael A., Macintyre, Ian G., and Rützler, Klaus, editors. 359–368. Washington, D.C.: Smithsonian Institution Scholarly Press. In Smithsonian Contributions to the Marine Sciences, 38.
Graham, Eileen S., Tuzzolino, Danielle M., Burrell, Rebecca B., and Breitburg, Denise L. 2009. "Interannual Variation in Gelatinous Zooplankton and Their Prey in the Rhode River, Maryland." In Proceedings of the Smithsonian Marine Science Symposium. Lang, Michael A., Macintyre, Ian G., and Rützler, Klaus, editors. 369–377. Washington, D.C.: Smithsonian Institution Scholarly Press. In Smithsonian Contributions to the Marine Sciences, 38.
The mineral component of the axis and holdfast of some gorgonacean octocorals (Coelenteratea: Anthozoa), with specieal reference to the family Gorgoniidae
Holcomb, M., Pandolfi, John M., Macintyre, Ian G., and Budd, Ann F. 2004. "Use of X-radiographs to distinguish members of the Montastraea annularis reef-coral species complex." Hydrobiologia, 530-31 211–222.
Burke, R., Macintyre, Ian G., and Adey, Walter H. 1995. "Overview of the Holocene history, architecture and structural components of Tague Bay reef and lagoon." In Terrestrial and Marine Geology of St. Croix, US Virgin Islands. Hubbard, Dennis K., editor. In Special Publication (West Indies Laboratory); no. 8.
Reid, R. Pamela and Macintyre, Ian G. 1998. "Carbonate recrystallization in shallow marine environments: A widespread diagenetic process forming micritized grains." Journal of Sedimentary Research, 68, (5) 928–946.
Macintyre, Ian G. and Reid, R. Pamela. 1998. "Recrystallization in living porcelaneous foraminifera ("Archaias angulatis"):Textural changes without Mineralogic alteration." Journal of Sedimentary Research, 68 11–19.
Steneck, Robert S., Miller, T. E., Reid, R. Pamela, and Macintyre, Ian G. 1998. "Ecological controls on stromatolite development in a modern reef environment: A test of the ecological refuge paradigm." Carbonates and Evaporites, 13, (1) 48–65.
Blackwelder, B. W., Macintyre, Ian G., and Pilkey, O. H. 1982. "Geology of Continental Shelf, Onslow Bay, North Carolina, as Revealed by Submarine Outcrops." American Association of Petroleum Geologists Bulletin, 66, (1) 44–56.
Cortés, J., Macintyre, Ian G., and Glynn, Peter William. 1994. "Holocene Growth History of an Eastern Pacific Fringing Reef, Punta Islotes, Costa Rica." Coral Reefs, 13, (2) 65–73.
Reid, R. Pamela, Macintyre, Ian G., Browne, K. M., Steneck, Robert S., and Miller, T. 1995. "Modern Marine Stromatolites in the Exuma Cays, Bahamas: Uncommonly Common." Facies, 33 1–18.